Studies with the Ribonucleic Acid Polymerase. II. Kinetic Aspects of Initiation and Polymerization

D. D. Anthony, C. W. Wu, D. A. Goldthwait

Research output: Contribution to journalArticle

66 Scopus citations

Abstract

Kinetic studies of ribonucleic acid synthesis with the deoxyribonucleic acid dependent ribonucleic acid polymerase of Escherichia coli are presented in this paper. A nonlinear double-reciprocal plot of nucleotide incorporation as a function of the concentration of the four nucleoside triphosphates was observed. The plot became linear and the amount ot incorporation was increased, particularly at low nucleotide concentrations, if a single nucleotide was fixed at a high concentration and if this nucleotide was one of those present in a significant percentage of the 5′- terminal nucleoside triphosphate positions. This effect on the double-reciprocal plot was demonstrated with adenosine triphosphate and calf thymus deoxyribonucleic acid, guanosine triphosphate and Micrococcus lysodeikticus deoxyribonucleic acid, and adenosine triphosphate and dAT copolymer. Linear plots were also obtained if the deoxyribonucleic acid-enzyme complex was preincubated with unlabeled nucleotides to initiate ribonucleic acid synthesis and the complexes were then filtered on nitrocellulose membranes and incubated with varying concentrations of the four nucleotides. This was observed with T4, calf thymus, and M. lysodeikticus deoxyribonucleic acid. Apparent Kmvalues were obtained when three nucleotides were fixed at 0.4 mM and the fourth varied. With M. lysodeikticus deoxyribonucleic acid, where more than 85% of the 5′-terminal nucleotide is guanosine triphosphate, an apparent Kmfor guanosine triphosphate was 0.15 mM while the apparent Kmfor adenosine triphosphate, cytidine triphosphate, or uridine triphosphate was approximately 0.015 mM. With prior initiation with the four unlabeled nucleotides and M. lysodeikticus deoxyribonucleic acid, the apparent Kmfor guanosine triphosphate decreased to 0.027 mM. A tentative model has been proposed. Initiation of ribonucleic acid synthesis involves the formation of the first phosphodiester bond. The apparent Kmfor the 5′-terminal nucleotide is approximately 0.15 mM. Polymerization involves migration of the enzyme on the deoxyribonucleic acid and the addition of subsequent nucleotides. An apparent Kmfor nucleotides for polymerization is approximately 0.015 mM or one-tenth the concentration for initiation.

Original languageEnglish
Pages (from-to)246-256
Number of pages11
JournalBiochemistry
Volume8
Issue number1
DOIs
StatePublished - 1 Jan 1969

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