RNAcentral: an international database of ncRNA sequences

Anton I. Petrov; Simon J. E. Kay; Richard Gibson; Eugene Kulesha; Dan Staines; Elspeth A. Bruford; Mathew W. Wright; Sarah Burge; Robert D Finn; Paul J. Kersey,; Guy Cochrane; Alex Bateman; Sam Griffiths-Jones; Jennifer Harrow; Patricia P. Chan; Todd M. Lowe; Christian W. Zwieb; Jacek Wower; Kelly P. Williams; Corey M. Hudson; Robin Gutell; Michael B Clark; Marcel Dinger; Xiu Cheng Quek; Janusz M Bujnicki; Nam-Hai Chua; Jun Liu; Huan     Wang; Geir Skogerbo; Yi Zhao; Runsheng Chen; Weimin Zhu; James R. Cole; Benli Chai; Hsien-Da Huang; His-Yuan Huang; J. Michael Cherry; Artemis Hatzigeorgiou; Kim D. Pruitt

doi:10.1093/nar/gku991

RNAcentral: an international database of ncRNA sequences

Anton I. Petrov, Simon J. E. Kay, Richard Gibson, Eugene Kulesha, Dan Staines, Elspeth A. Bruford, Mathew W. Wright, Sarah Burge, Robert D Finn, Paul J. Kersey,, Guy Cochrane, Alex Bateman, Sam Griffiths-Jones, Jennifer Harrow, Patricia P. Chan, Todd M. Lowe, Christian W. Zwieb, Jacek Wower, Kelly P. Williams, Corey M. HudsonRobin Gutell, Michael B Clark, Marcel Dinger, Xiu Cheng Quek, Janusz M Bujnicki, Nam-Hai Chua, Jun Liu, Huan Wang, Geir Skogerbo, Yi Zhao, Runsheng Chen, Weimin Zhu, James R. Cole, Benli Chai, Hsien-Da Huang, His-Yuan Huang, J. Michael Cherry, Artemis Hatzigeorgiou, Kim D. Pruitt

Department of Biological Science and Technology

Research output: Contribution to journal › Article › peer-review

72 Scopus citations

Abstract

The field of non-coding RNA biology has been hampered by the lack of availability of a comprehensive, up-to-date collection of accessioned RNA sequences. Here we present the first release of RNAcentral, a database that collates and integrates information from an international consortium of established RNA sequence databases. The initial release contains over 8.1 million sequences, including representatives of all major functional classes. A web portal (http://rnacentral.org) provides free access to data, search functionality, cross-references, source code and an integrated genome browser for selected species.

Original language	English
Pages (from-to)	D123-D129
Number of pages	7
Journal	Nucleic Acids Research
Volume	47
Issue number	D1
DOIs	https://doi.org/10.1093/nar/gku991
State	Published - 28 Jan 2015

Keywords

GENOME; EVOLUTION; GENCODE

Access to Document

10.1093/nar/gku991

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Petrov, A. I., Kay, S. J. E., Gibson, R., Kulesha, E., Staines, D., Bruford, E. A., Wright, M. W., Burge, S., Finn, R. D., Kersey, P. J., Cochrane, G., Bateman, A., Griffiths-Jones, S., Harrow, J., Chan, P. P., Lowe, T. M., Zwieb, C. W., Wower, J., Williams, K. P., ... Pruitt, K. D. (2015). RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research, 47(D1), D123-D129. https://doi.org/10.1093/nar/gku991

Petrov, Anton I. ; Kay, Simon J. E. ; Gibson, Richard ; Kulesha, Eugene ; Staines, Dan ; Bruford, Elspeth A. ; Wright, Mathew W. ; Burge, Sarah ; Finn, Robert D ; Kersey, Paul J. ; Cochrane, Guy ; Bateman, Alex ; Griffiths-Jones, Sam ; Harrow, Jennifer ; Chan, Patricia P. ; Lowe, Todd M. ; Zwieb, Christian W. ; Wower, Jacek ; Williams, Kelly P. ; Hudson, Corey M. ; Gutell, Robin ; Clark, Michael B ; Dinger, Marcel ; Quek, Xiu Cheng ; Bujnicki, Janusz M ; Chua, Nam-Hai ; Liu, Jun ; Wang, Huan ; Skogerbo, Geir ; Zhao, Yi ; Chen, Runsheng ; Zhu, Weimin ; Cole, James R. ; Chai, Benli ; Huang, Hsien-Da ; Huang, His-Yuan ; Cherry, J. Michael ; Hatzigeorgiou, Artemis ; Pruitt, Kim D. / RNAcentral: an international database of ncRNA sequences. In: Nucleic Acids Research. 2015 ; Vol. 47, No. D1. pp. D123-D129.

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abstract = "The field of non-coding RNA biology has been hampered by the lack of availability of a comprehensive, up-to-date collection of accessioned RNA sequences. Here we present the first release of RNAcentral, a database that collates and integrates information from an international consortium of established RNA sequence databases. The initial release contains over 8.1 million sequences, including representatives of all major functional classes. A web portal (http://rnacentral.org) provides free access to data, search functionality, cross-references, source code and an integrated genome browser for selected species.",

keywords = "GENOME; EVOLUTION; GENCODE",

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Petrov, AI, Kay, SJE, Gibson, R, Kulesha, E, Staines, D, Bruford, EA, Wright, MW, Burge, S, Finn, RD, Kersey, PJ, Cochrane, G, Bateman, A, Griffiths-Jones, S, Harrow, J, Chan, PP, Lowe, TM, Zwieb, CW, Wower, J, Williams, KP, Hudson, CM, Gutell, R, Clark, MB, Dinger, M, Quek, XC, Bujnicki, JM, Chua, N-H, Liu, J, Wang, H, Skogerbo, G, Zhao, Y, Chen, R, Zhu, W, Cole, JR, Chai, B, Huang, H-D, Huang, H-Y, Cherry, JM, Hatzigeorgiou, A & Pruitt, KD 2015, 'RNAcentral: an international database of ncRNA sequences', Nucleic Acids Research, vol. 47, no. D1, pp. D123-D129. https://doi.org/10.1093/nar/gku991

RNAcentral: an international database of ncRNA sequences. / Petrov, Anton I.; Kay, Simon J. E.; Gibson, Richard; Kulesha, Eugene; Staines, Dan; Bruford, Elspeth A.; Wright, Mathew W.; Burge, Sarah; Finn, Robert D; Kersey, Paul J.; Cochrane, Guy; Bateman, Alex; Griffiths-Jones, Sam; Harrow, Jennifer; Chan, Patricia P.; Lowe, Todd M.; Zwieb, Christian W.; Wower, Jacek; Williams, Kelly P.; Hudson, Corey M.; Gutell, Robin; Clark, Michael B; Dinger, Marcel; Quek, Xiu Cheng; Bujnicki, Janusz M; Chua, Nam-Hai; Liu, Jun; Wang, Huan ; Skogerbo, Geir; Zhao, Yi; Chen, Runsheng; Zhu, Weimin; Cole, James R.; Chai, Benli; Huang, Hsien-Da; Huang, His-Yuan; Cherry, J. Michael; Hatzigeorgiou, Artemis; Pruitt, Kim D.

In: Nucleic Acids Research, Vol. 47, No. D1, 28.01.2015, p. D123-D129.

Research output: Contribution to journal › Article › peer-review

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AU - Petrov, Anton I.

AU - Kay, Simon J. E.

AU - Gibson, Richard

AU - Kulesha, Eugene

AU - Staines, Dan

AU - Bruford, Elspeth A.

AU - Wright, Mathew W.

AU - Burge, Sarah

AU - Finn, Robert D

AU - Kersey,, Paul J.

AU - Cochrane, Guy

AU - Bateman, Alex

AU - Griffiths-Jones, Sam

AU - Harrow, Jennifer

AU - Chan, Patricia P.

AU - Lowe, Todd M.

AU - Zwieb, Christian W.

AU - Wower, Jacek

AU - Williams, Kelly P.

AU - Hudson, Corey M.

AU - Gutell, Robin

AU - Clark, Michael B

AU - Dinger, Marcel

AU - Quek, Xiu Cheng

AU - Bujnicki, Janusz M

AU - Chua, Nam-Hai

AU - Liu, Jun

AU - Wang, Huan

AU - Skogerbo, Geir

AU - Zhao, Yi

AU - Chen, Runsheng

AU - Zhu, Weimin

AU - Cole, James R.

AU - Chai, Benli

AU - Huang, Hsien-Da

AU - Huang, His-Yuan

AU - Cherry, J. Michael

AU - Hatzigeorgiou, Artemis

AU - Pruitt, Kim D.

PY - 2015/1/28

Y1 - 2015/1/28

N2 - The field of non-coding RNA biology has been hampered by the lack of availability of a comprehensive, up-to-date collection of accessioned RNA sequences. Here we present the first release of RNAcentral, a database that collates and integrates information from an international consortium of established RNA sequence databases. The initial release contains over 8.1 million sequences, including representatives of all major functional classes. A web portal (http://rnacentral.org) provides free access to data, search functionality, cross-references, source code and an integrated genome browser for selected species.

AB - The field of non-coding RNA biology has been hampered by the lack of availability of a comprehensive, up-to-date collection of accessioned RNA sequences. Here we present the first release of RNAcentral, a database that collates and integrates information from an international consortium of established RNA sequence databases. The initial release contains over 8.1 million sequences, including representatives of all major functional classes. A web portal (http://rnacentral.org) provides free access to data, search functionality, cross-references, source code and an integrated genome browser for selected species.

KW - GENOME; EVOLUTION; GENCODE

U2 - 10.1093/nar/gku991

DO - 10.1093/nar/gku991

M3 - Article

VL - 47

SP - D123-D129

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - D1

ER -