Analyzing microarray data

Jui-Hung Hung, Zhiping Weng

Research output: Contribution to journalArticlepeer-review

5 Scopus citations

Abstract

Because there is no widely used software for analyzing RNA-seq data that has a graphical user interface, this protocol provides an example of analyzing microarray data using Babelomics. This analysis entails performing quantile normalization and then detecting differentially expressed genes associated with the transgenesis of a human oncogene c-Myc in mice. Finally, hierarchical clustering is performed on the differentially expressed genes using the Cluster program, and the results are visualized using TreeView.

Original languageEnglish
Pages (from-to)244-253
Number of pages10
JournalCold Spring Harbor Protocols
Volume2017
Issue number3
DOIs
StatePublished - 1 Mar 2017

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