Projects per year
Personal profile
Research Interests
Laboratory of Network Medicine and Systems Biology (MedSB.net) aims to integrate multi-omics data with the biological networks for establishing disease-focused regulatory network models. Via the comparative analysis of networks for bulk and individual patient data, single-cell data, as well as pharmacogenomics data, we will enable the development of the next-generation diagnostics and the clinical decision support systems.
Experience
2019.8 – present
Assistant Professor
Institute of Bioinformatics and Systems Biology, National Chiao-Tung University, Hsinchu, Taiwan
2017.10 – 2019.7
JSPS Post-Doctoral Research Fellow/Guest Research Associate
Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan
2016.2 –2017.9
Assistant Research Fellow
Center for Bioinformatics Research, National Chiao Tung University, Hsinchu, Taiwan
2014.9 –2016.1
Post-Doctoral Research Fellow
Institute of Bioinformatics and Systems Biology, National Chiao-Tung University, Hsinchu, Taiwan
Awards
- MOST Grant for the Einstein Program, Taiwan
- BioICT Junior Chair Professor, National Chiao Tung University, Taiwan, 2018
- The best poster award, The 7th joint Conference on Informatics In Biology, Medicine and Pharmacology (IIBMP 2018), Japan, 2018
- JSPS Postdoctoral Fellowship for Research in Japan, 2017 (Selection Ratio = 125/1252 = 10%)
- The third place of poster competition, The 17th Biophysics Conference, 2012
- Outstanding performances in the poster contest of the college of biological and technology, National Chiao Tung University, Taiwan, 2010 and 2013
- The 1st place in my graduating class of the Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Taiwan, 2010
- Academic achievement award in the Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Taiwan, 2009
Education/Academic qualification
PhD, National Yang Ming Chiao Tung University
2010 → 2014
Award Date: 31 Jul 2014
Master, National Yang Ming Chiao Tung University
2008 → 2010
Award Date: 31 Jul 2010
Bachelor, National Kaohsiung Normal University
2004 → 2008
Award Date: 31 Jul 2008
External positions
Center For Intelligent Drug Systems and Smart Bio-devices, Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B)
1 Aug 2019 → …Fingerprint
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Projects
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從患者個體至單細胞之癌症聚焦網路應用於開發個人化生物標記及癌症治療(2/5)
1/09/20 → 31/08/21
Project: Government Ministry › Ministry of Science and Technology
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Comprehensive Cancer-focused Networks From Individual Patients To Single Cells for Developing Personalized Biomarkers And Cancer Therapies
1/09/19 → 31/08/20
Project: Government Ministry › Ministry of Science and Technology
Research output
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ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sites
Liu, P., Song, J., Lin, C-Y. & Akutsu, T., Dec 2021, In: BMC Bioinformatics. 22, 1, p. 1-17 17 p., 63.Research output: Contribution to journal › Article › peer-review
Open Access -
ABL genomic editing sufficiently abolishes oncogenesis of human chronic myeloid leukemia cells in vitro and in vivo
Chen, S. H., Hsieh, Y. Y., Tzeng, H. E., Lin, C. Y., Hsu, K. W., Chiang, Y. S., Lin, S. M., Su, M. J., Hsieh, W. S. & Lee, C. H., Jun 2020, In: Cancers. 12, 6, 1399.Research output: Contribution to journal › Article › peer-review
Open Access -
An integrated genomic strategy to identify CHRNB4 as a diagnostic/prognostic biomarker for targeted therapy in head and neck cancer
Chuang, Y. H., Lee, C. H., Lin, C. Y., Liu, C. L., Huang, S. H., Lee, J. Y., Chiu, Y. Y., Lee, J. C. & Yang, J. M., May 2020, In: Cancers. 12, 5, 1324.Research output: Contribution to journal › Article › peer-review
Open Access -
Deep learning with evolutionary and genomic profiles for identifying cancer subtypes
Lin, C-Y., Ruan, P., Li, R., Yang, J-M., See, S., Song, J. & Akutsu, T., 1 Jun 2019, In: Journal of Bioinformatics and Computational Biology. 17, 3, 1940005.Research output: Contribution to journal › Article › peer-review
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HDAC1,2 knock-out and HDACi induced cell apoptosis in imatinib-resistant K562 cells
Chen, S. H., Chow, J. M., Hsieh, Y. Y., Lin, C-Y., Hsu, K. W., Hsieh, W. S., Chi, W. M., Shabangu, B. M. & Lee, C. H., 1 May 2019, In: International journal of molecular sciences. 20, 9, 2271.Research output: Contribution to journal › Article › peer-review
Open Access
Prizes
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Academic achievement award in the Institute of Bioinformatics and Systems Biology, National Chiao Tung University
Lin, Chun-Yu (Recipient), 2009
Prize: Honorary award
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BioICT Junior Chair Professor, National Chiao Tung University
Lin, Chun-Yu (Recipient), 2018
Prize: Honorary award
-
JSPS Postdoctoral Fellowship for Research in Japan
Lin, Chun-Yu (Recipient), 2017
Prize: Honorary award
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Outstanding performances in the poster contest of the college of biological and technology, National Chiao Tung University
Lin, Chun-Yu (Recipient), 2013
Prize: Honorary award
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Outstanding performances in the poster contest of the college of biological and technology, National Chiao Tung University
Lin, Chun-Yu (Recipient), 2010
Prize: Honorary award